The detailed information of tRNA gene sequence


Sequence ID>SRA1013540
Genome IDSRR023396.185199
Search identical group
Phylum/ClassBrazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
Species
Start position on genome 4
End posion on genome 76
Amino Acid Ala
Anticodon CGC
Upstream region at tRNA start position 
nnnnnntttT
tRNA gene sequence 
GGGGACGTGGTGTAACGGGAGCACGCCGCGGTCGCATCGCGGAAATGAGGGTTCGATTCC
CTTCGTCTCCATtt
Downstream region at tRNA end position 
ttttgtatcc
Secondary structure (Cloverleaf model)
>SRA1013540	Ala	CGC
                   T      ATtt ttttgtatcc
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     C - G
                     G - C          T T
                    T     T T C C C     A
        A A        G      + | | | |     G
      C     T G T G       G A G G G     C
      G     + | | |                 T T
      G     G C A C
        G A        G     AAAT
                    C - G
                    C - G
                    G - C
                    C - G
                    G - C
                  G       T
                  T       A
                    C G C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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