The detailed information of tRNA gene sequence


Sequence ID>SRA1013585
Genome IDSRR023396.249374
Search identical group
Phylum/ClassBrazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
Species
Start position on genome 106
End posion on genome 179
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
aattaaatgt
tRNA gene sequence 
GGCGGCATCGCCAAGTGGTAAGGCAGAGGACTGCAAATCCTTCATCCTCGGTTCGAATCC
GAGTGCCGCCTCCA
Downstream region at tRNA end position 
ttttagtttt
Secondary structure (Cloverleaf model)
>SRA1013585	Cys	GCA
                   t      TCCA ttttagtttt
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     A - T          T A
                    T     G A G C C     A
        G A        C      | | | | |     G
      T     A C C G       C T C G G     C
      G       | | |                 T T
      G     A G G C
        T A        A     CATC
                    G + T
                    A - T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    G C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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