The detailed information of tRNA gene sequence


Sequence ID>SRA1013636
Genome IDSRR023396.321703
Search identical group
Phylum/ClassBrazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
Species
Start position on genome 164
End posion on genome 69
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
caaataaaaa
tRNA gene sequence 
GGAGAGGTACCCAAGCCTGGTTTAAGGGGGCGGATTGCTAATCCGTTAAGGGGGTTTATA
CTTCCTTCGAGGGTTCGAATCCCTCCCTCTCCGCCA
Downstream region at tRNA end position 
gtatagcttc
Secondary structure (Cloverleaf model)
>SRA1013636	Ser	GCT
                   a      GCCA gtatagcttc
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C T C C C     A
    C C G A        A      | | | | |     G
  T         A C C C       G A G G G     C
  G           | | |                 T T
  G         A G G G
    T T T A        G     TAAGGGGGTTTATACTTCCTTC
                    G + T
                    C - G
                    G - C
                    G - C
                    A - T
                  T       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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