The detailed information of tRNA gene sequence


Sequence ID>SRA1016334
Genome IDSRR023846.456861
Search identical group
Phylum/ClassCommunity proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Species
Start position on genome 274
End posion on genome 199
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
nnnncggcgt
tRNA gene sequence 
AGGGGTATAGCTCAGTTGGTAGAGCGGCGGTCTCCAAAACCGCAGGCCGTAGGTTCGAGC
CCTACTGCCCCTGCCA
Downstream region at tRNA end position 
ttttcttccc
Secondary structure (Cloverleaf model)
>SRA1016334	Trp	CCA
                   t      GCCA ttttcttccc
                     A - T
                     G - C
                     G - C
                     G - C
                     G - C
                     T + G
                     A - T          C G
                    T     C A T C C     A
      T G A        A      | | | | |     G
    T       C T C G       G T A G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     AGGCC
                    G - C
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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