The detailed information of tRNA gene sequence


Sequence ID>SRA1016579
Genome IDSRR027355.34386
Search identical group
Phylum/ClassInvestigation of prokaryote diversity in the sub-seafloor biosphere by 16S rRNA gene tag (V6) sequencing (SRP001218)
Species
Start position on genome 22
End posion on genome 112
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
attcaacgcc
tRNA gene sequence 
GGAGAGGTGGCAGAGCGGTTGAATGCACTGGTCTTGAAAACCAGCAAGGGTTTGTAGCCC
TTCGAGGGTTCGAATCCCTCCCTCTCCGCCA
Downstream region at tRNA end position 
cttattggca
Secondary structure (Cloverleaf model)
>SRA1016579	Ser	TGA
                   c      GCCA cttattggca
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C T C C C     A
      C G A        G      | | | | |     G
    G       G A C G       G A G G G     C
    G         | | |                 T T
    T       A T G C
      T G A        A     CAAGGGTTTGTAGCCCTTC
                    C - G
                    T - A
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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