The detailed information of tRNA gene sequence


Sequence ID>SRA1016622
Genome IDSRR027367.20569
Search identical group
Phylum/ClassAnalysis of diversity of coastal microbial mats using 454 technology (SRP001219)
Species
Start position on genome 21
End posion on genome 97
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
gagtcaacgc
tRNA gene sequence 
CGGGGGGTGGAGCAGTTCGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGCAGGTTCAAA
TCCTGCCCCCGCCACCA
Downstream region at tRNA end position 
tatgnnnnnn
Secondary structure (Cloverleaf model)
>SRA1016622	Met	CAT
                   c      ACCA tatgnnnnnn
                     C   C
                     G - C
                     G   G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G T C C     A
      T G A        G      | | | | |     A
    T       C G A G       G C A G G     C
    C       | | | |                 T T
    G       G C T C
      G T A        G     AGGTC
                    T - A
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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