The detailed information of tRNA gene sequence


Sequence ID>SRA1016632
Genome IDSRR027369.38678
Search identical group
Phylum/ClassAnalysis of diversity of coastal microbial mats using 454 technology (SRP001219)
Species
Start position on genome 252
End posion on genome 179
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
nnnnnnnncc
tRNA gene sequence 
GCCCCCTTCGTCTAGTGGCCCAGGACACTGGATTCTCAGTCCAGAAACAGCAGTTCGAAT
CTGTTAGGGGGTACtg
Downstream region at tRNA end position 
ttgatgcagc
Secondary structure (Cloverleaf model)
>SRA1016632	Glu	CTC
                   c      ACtg ttgatgcagc
                     G + T
                     C - G
                     C - G
                     C - G
                     C - G
                     C - G
                     T - A          T A
                    T     T T G T C     A
      T G A        C      | + | | |     G
    G       T C T G       A G C A G     C
    G       + | | |                 T T
    C       G G A C
      C C A        A     AAAC
                    C - G
                    T - A
                    G - C
                    G - C
                    A - T
                  T       G
                  T       A
                    C T C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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