The detailed information of tRNA gene sequence


Sequence ID>SRA1016657
Genome IDSRR027369.52155
Search identical group
Phylum/ClassAnalysis of diversity of coastal microbial mats using 454 technology (SRP001219)
Species
Start position on genome 249
End posion on genome 162
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
nncgcgttct
tRNA gene sequence 
GGAGGGCTGGCAGAGTGGTCGATTGCACCGGTCTTGAAAACCGGCAACCCGCAAGGGTTC
CAGGGTTCGAATCCCTGGCCCTCCGCCA
Downstream region at tRNA end position 
gctcggcttg
Secondary structure (Cloverleaf model)
>SRA1016657	Ser	TGA
                   t      GCCA gctcggcttg
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G          T A
                    T     G T C C C     A
      T G A        G      | | | | |     G
    G       G A C G       C A G G G     C
    G       + | | |                 T T
    T       T T G C
      C G A        A     CAACCCGCAAGGGTTC
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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