The detailed information of tRNA gene sequence


Sequence ID>C151078485
Genome IDCP011232
Search identical group
Phylum/ClassThermotogota
SpeciesKosmotoga pacifica SLHLJ1 [CP011232]
Start position on genome 798894
End posion on genome 798817
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ttttagtatc
tRNA gene sequence 
GGGCTCGTAGCTCAGTTTGGTTAGAGCTTCCGGCTCATAACCGGGCGGTCGGTGGTTCGA
ATCCACCCGAGCCCACCA
Downstream region at tRNA end position 
aagcggctta
Secondary structure (Cloverleaf model)
>C151078485	Met	CAT
                   c      ACCA aagcggctta
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     C - G
                     G - C          T A
                    T     C C A C C     A
    T T G A        A      | | | | |     G
  T         C T C G       G G T G G     C
  G         | | | |                 T T
  G         G A G C
    T T A          T     CGGTC
                    T + G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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