The detailed information of tRNA gene sequence


Sequence ID>C152000179
Genome IDHG322949
Search identical group
Phylum/ClassBetaproteobacteria
SpeciesJanthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [HG322949]
Start position on genome 2266965
End posion on genome 2267060
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
tgtccgcatt
tRNA gene sequence 
GGAAAGCATACTCATCCGGTGATGTGGCCGGGCTTCAAACCCGGTGGAGGGCGTCAGCCG
TTCTCCCGTAGGTTCGACTCCTACTGTTTTCCGCCA
Downstream region at tRNA end position 
aattctcctg
Secondary structure (Cloverleaf model)
>C152000179	SeC	TCA
                   t      GCCA aattctcctg
                     G - C
                     G - C
                     A - T
                     A - T
                     A - T
                     G + T
                     C - G
                     A - T          T C
                    T     C A T C C     A
      C C T        A      | | | | |     G
    G       A C T C       G T A G G     C
    G       | |   |                 T T
    T       T G T G
      G A          G     TGGAGGGCGTCAGCCGTTCTCCC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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