The detailed information of tRNA gene sequence


Sequence ID>W2060024666
Genome IDJACATB010000017
Search identical group
Phylum/ClassNitrososphaerota
SpeciesMarine Group I thaumarchaeote D11 [JACATB]
Start position on genome 13991
End posion on genome 14088
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
caattgctct
tRNA gene sequence 
GTCGGGATAGCCAAGCCTGGTAAGGCGGACGCCTCGAAAGCGTCTGTGCATCTGCACGCG
AGGGTTCGAATCCCTCTCCCGGCcttg
Downstream region at tRNA end position 
ctgatttgga
Secondary structure (Cloverleaf model)
>W2060024666	Ser	CGA
                   t      cttg ctgatttgga
                     G - C
                     T + G
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     C T C C C     A
      C G A        A      | | | | |     G
    C       A C C G       G A G G G     C
    T         | | |                 T T
    G       A G G C
      G T A        G     TGTGCATCTGCACGC
                    G - C
                    A - T
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A *
                    C G A
intron: position=38, length=14 (in A-loop)
ATCTCATACAGGAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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