The detailed information of tRNA gene sequence


Sequence ID>W2060035053
Genome IDMNFY01000096
Search identical group
Phylum/ClassNitrososphaerota
SpeciesThaumarchaeota archaeon 13_1_40CM_3_50_5 [MNFY]
Start position on genome 1829
End posion on genome 1940
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
ttcacgcaac
tRNA gene sequence 
GCCGGGATCGCCTAGCCAGGTATGGCGTCGGATTGCTAATCCGATGGGCCTTAGGCCCTC
GTGGGTTCAAATCCCACTCCCGGCGCCt
Downstream region at tRNA end position 
tccccctcaa
Secondary structure (Cloverleaf model)
>W2060035053	Ser	GCT
                   c      GCCt tccccctcaa
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     C A C C C     A
      C G A        C      | | | | |     A
    C       T C C G       G T G G G     C
    A         | | |                 T T
    G       T G G C
      G T A        G     TGGGCCTTAGGCCCTC
                    T - A
                    C - G
                    G - C
                    G - C
                    A - T
                  T       A
                  T       A *
                    G C T
intron: position=38, length=24 (in A-loop)
AACCTTGCTTGCGCAGGTGTGGAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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