The detailed information of tRNA gene sequence


Sequence ID>W2060035072
Genome IDMNFZ01000080
Search identical group
Phylum/ClassNitrososphaerota
SpeciesThaumarchaeota archaeon 13_1_40CM_3_38_6 [MNFZ]
Start position on genome 1599
End posion on genome 1696
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
cttgacagtt
tRNA gene sequence 
GCCAGGTTAGCCAAGTGGTACGGCGACCGCCTCGAGAGCGGTTGTGCTTTAAGCACCCAA
GGGTTCGAATCCCTTACCTGGCcttg
Downstream region at tRNA end position 
ataattcagt
Secondary structure (Cloverleaf model)
>W2060035072	Ser	CGA
                   t      cttg ataattcagt
                     G - C
                     C - G
                     C - G
                     A - T
                     G - C
                     G - C
                     T - A          T A
                    T     T T C C C     A
        G A        A      | | | | |     G
      T     A C C G       A A G G G     C
      G       | | |                 T T
      G     C G G C
        T A        G     TGTGCTTTAAGCACCC
                    A - T
                    C - G
                    C - G
                    G - C
                    C - G
                  C       A
                  T       G *
                    C G A
intron: position=38, length=15 (in A-loop)
ATCATACAACAAGGT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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