The detailed information of tRNA gene sequence


Sequence ID>W2060048455
Genome IDQBUN01000410
Search identical group
Phylum/ClassMethanobacteriota
SpeciesANME-1 cluster archaeon GoMg3.2 [QBUN]
Start position on genome 13045
End posion on genome 12948
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
gaggagtaaa
tRNA gene sequence 
GCCGAGGTGGCTGAGTGGTAAGGCGCAGGCCTGGAAAGCCTGTGTTCCGCAAGGGACTCA
AGGGTTCAAATCCCTTCCTCGGCGaaa
Downstream region at tRNA end position 
caagactaaa
Secondary structure (Cloverleaf model)
>W2060048455	Ser	GGA
                   a      Gaaa caagactaaa
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     T T C C C     A
        G A        G      | | | | |     A
      T     G T C G       A A G G G     C
      G       + | |                 T T
      G     A G G C
        T A        G     TGTTCCGCAAGGGACTC
                    C - G
                    A - T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    G G A
intron: position=38, length=14 (in A-loop)
CTCCCCGAACAGGT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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