The detailed information of tRNA gene sequence


Sequence ID>W2060055973
Genome IDRCMB01000013
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCandidatus Nitrosotalea sp. TS [RCMB]
Start position on genome 25162
End posion on genome 25257
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
ttcacaggtt
tRNA gene sequence 
GCCAGGTTAGCCAAGCGGTACGGCGACCGCCTCGAGAGCGGTTGTGCTTCTGCACTCAGG
GGTTCGAATCCCTTACCTGGCctga
Downstream region at tRNA end position 
ccttttttta
Secondary structure (Cloverleaf model)
>W2060055973	Ser	CGA
                   t      ctga ccttttttta
                     G - C
                     C - G
                     C - G
                     A - T
                     G - C
                     G - C
                     T - A          T A
                    T     T T C C C     A
        G A        A      | + | | |     G
      C     A C C G       A G G G G     C
      G       | | |                 T T
      G     C G G C
        T A        G     TGTGCTTCTGCACTC
                    A - T
                    C - G
                    C - G
                    G - C
                    C - G
                  C       A
                  T       G *
                    C G A
intron: position=38, length=14 (in A-loop)
ATCACATACAAGGT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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