The detailed information of tRNA gene sequence


Sequence ID>W2060075611
Genome IDUYNY01000087
Search identical group
Phylum/ClassNitrososphaerota
SpeciesNitrosopumilaceae archaeon [UYNY]
Start position on genome 29
End posion on genome 126
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
gccgtcccgt
tRNA gene sequence 
GCCGGGGTGGCCTAGCCTGGTAGGGCGCGCGCTTGGAAAGCGCGTTCCCGCAAGGGATCG
GGAGTTCAAATCTCCCTCCCGGCctct
Downstream region at tRNA end position 
gatttaccgg
Secondary structure (Cloverleaf model)
>W2060075611	Ser	GGA
                   t      ctct gatttaccgg
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G + T          T A
                    T     C C C T C     A
      C G A        G      | | | | |     A
    C       T C C G       G G G A G     C
    T       + | | |                 T T
    G       G G G C
      G T A        G     TTCCCGCAAGGGATC
                    C - G
                    G - C
                    C - G
                    G - C
                    C - G
                  T       A
                  T       A *
                    G G A
intron: position=38, length=14 (in A-loop)
GCTGATCGCCAAAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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