The detailed information of tRNA gene sequence


Sequence ID>W2060084222
Genome IDVOAH01000014
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCandidatus Nitrosocosmicus sp. Kfb [VOAH]
Start position on genome 3479
End posion on genome 3579
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
ttaaacaaaa
tRNA gene sequence 
GCCGGGGTCGCCTAGCCTGGAAGGGCGCAAGCCTGGAAAGCTTGTGGCCCGTGAGGGCCT
CGAGGGTTCGAATCCCTCTCCCGGCcctt
Downstream region at tRNA end position 
ttttctttag
Secondary structure (Cloverleaf model)
>W2060084222	Ser	GGA
                   a      cctt ttttctttag
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G + T          T A
                    T     C T C C C     A
      C G A        C      | | | | |     G
    C       T C C G       G A G G G     C
    T       + | | |                 T T
    G       G G G C
      G A A        G     TGGCCCGTGAGGGCCTC
                    C - G
                    A - T
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A *
                    G G A
intron: position=38, length=15 (in A-loop)
ATTAGGAAACTATAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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