The detailed information of tRNA gene sequence


Sequence ID>W2060060213
Genome IDRXOB02000003
Search identical group
Phylum/ClassMethanobacteriota
SpeciesHalorussus amylolyticus YC93 [RXOB]
Start position on genome 111390
End posion on genome 111494
Amino Acid Ile2
Anticodon CAT
Upstream region at tRNA start position 
cagtacgtgc
tRNA gene sequence 
GGGCCCGTAGCTAAGTCTGGTAAAGCCCCCGGCTCATAACCGGGTGATTCCTTGGTTCGA
ATCCGAGCGGGCCCtttt
Downstream region at tRNA end position 
ctgcgacaaa
Secondary structure (Cloverleaf model)
>W2060060213	Ile2	CAT
                   c      tttt ctgcgacaaa
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G A G C C     A
      T G A        A      | | + | |     G
    C       A T C G       C T T G G     C
    T         | | |                 T T
    G       A A G C
      G T A        C     TGATTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
intron: position=38, length=30 (in A-loop)
TTGACGACTGGTGTTCCAGCGTCATGGGTC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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