The detailed information of tRNA gene sequence


Sequence ID>W2060061743
Genome IDSBIR01000006
Search identical group
Phylum/ClassMethanobacteriota
SpeciesHalorussus sp. DLLS-82 [SBIR]
Start position on genome 8854
End posion on genome 8751
Amino Acid Ile2
Anticodon CAT
Upstream region at tRNA start position 
gtggatctgc
tRNA gene sequence 
GGGCCCGTAGCTAAGTCTGGTAAAGCCCCCGGCTCATAACCGGGTGACTCCTTGGTTCGA
ATCCGAGCGGGCCCAcgt
Downstream region at tRNA end position 
tcctctcctc
Secondary structure (Cloverleaf model)
>W2060061743	Ile2	CAT
                   c      Acgt tcctctcctc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G A G C C     A
      T G A        A      | | + | |     G
    C       A T C G       C T T G G     C
    T         | | |                 T T
    G       A A G C
      G T A        C     TGACTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
intron: position=38, length=29 (in A-loop)
TTGGGACTGGAAATCCAGTGCCATGGGAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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