The detailed information of tRNA gene sequence


Sequence ID>SRA1039441
Genome IDSRR035090.492096
Search identical group
Phylum/Class454 Sequencing (SRP001811)
Species
Start position on genome 413
End posion on genome 315
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
ncatcaccat
tRNA gene sequence 
GGAAGTGCGCGGCTTACTGGTGAGGCCCTCGGACTTCAAATCCGATGTGGGGCGCTAAAA
ACCGTCCCGGGTGGGTTCGATTCCCATGCACTTCCGCCA
Downstream region at tRNA end position 
tttatatcaa
Secondary structure (Cloverleaf model)
>SRA1039441	SeC	TCA
                   t      GCCA tttatatcaa
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     T - A
                     G - C
                     C - G          T T
                    G     T A C C C     A
      C A T        C      + | | | |     G
    T       T C G G       G T G G G     C
    G       + | | |                 T T
    G       G G C C
      T G A        C     TGTGGGGCGCTAAAAACCGTCCCGG
                    T - A
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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