The detailed information of tRNA gene sequence


Sequence ID>W2011413119
Genome IDREFO01000017
Search identical group
Phylum/ClassAquificota
SpeciesHydrogenothermus marinus VM1 [REFO]
Start position on genome 26710
End posion on genome 26620
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
ttcctttctt
tRNA gene sequence 
GGAGGGATGGCCGAGTGGACGAAGGCGGGTGATTTGAAATCACTTGAGGGTTAACAGCCC
TCCGGGGGTTCGAATCCCTCTCCCTCCGCCA
Downstream region at tRNA end position 
taaattaaga
Secondary structure (Cloverleaf model)
>W2011413119	Ser	TGA
                   t      GCCA taaattaaga
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     C T C C C     A
      T G A        G      | + | | |     G
    G       G C C G       G G G G G     C
    G         | | |                 T T
    A       A G G C
      C G A        G     TGAGGGTTAACAGCCCTCC
                    G + T
                    G - C
                    T - A
                    G - C
                    A - T
                  T       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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