The detailed information of tRNA gene sequence


Sequence ID>SRA1047748
Genome IDSRR035094.34270
Search identical group
Phylum/Class454 Sequencing (SRP001815)
Species
Start position on genome 295
End posion on genome 196
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
gtgaccgctc
tRNA gene sequence 
GGAAGTGGTAAGCTCACTGGGTGGGGCCTCCCGGACTTCAAATCCGGTGTGCCGGGCTAA
AACCTCGGCAGGTGGGTTCGATTCCCATGCACTTCCGCCA
Downstream region at tRNA end position 
aacaattaca
Secondary structure (Cloverleaf model)
>SRA1047748	SeC	TCA
                   c      GCCA aacaattaca
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     T - A
                     G - C
                     G   G          T T
                    T     T A C C C     A
    T C A C        A      + | | | |     G
  G         T C G A       G T G G G     C
  G         +   | |                 T T
  G         G C C T
    T G G G        C     TGTGCCGGGCTAAAACCTCGGCAG
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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