The detailed information of tRNA gene sequence


Sequence ID>SRA1048139
Genome IDSRR035094.114980
Search identical group
Phylum/Class454 Sequencing (SRP001815)
Species
Start position on genome 97
End posion on genome 194
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
aaatcagcgc
tRNA gene sequence 
GGAAGTGCCAAGGTCACTGGTGGGCCTCCCGGACTTCAAATCCGGTGTGGGGCGCTAGAA
CCGTCCCGGGTGGGTTCGATTCCCATGCACTTCCGCCA
Downstream region at tRNA end position 
aattattcgt
Secondary structure (Cloverleaf model)
>SRA1048139	SeC	TCA
                   c      GCCA aattattcgt
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     T - A
                     G - C
                     C - G          T T
                    C     T A C C C     A
      C A C        A      + | | | |     G
    T       T G G A       G T G G G     C
    G       + | | |                 T T
    G       G C C T
      T G G        C     TGTGGGGCGCTAGAACCGTCCCGG
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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