The detailed information of tRNA gene sequence


Sequence ID>W2011971106
Genome IDVCBQ01000009
Search identical group
Phylum/ClassAlphaproteobacteria
SpeciesParacoccus sp. FO-3 [VCBQ]
Start position on genome 40066
End posion on genome 39977
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
accgcgcggc
tRNA gene sequence 
GGAGACGTGGCCGAGTGGTCGAAGGCACACCCCTGCTAAGGGTGCAGGCGGGAAACCGCC
TCGAGGGTTCGAATCCCTTCGTCTCCGCCA
Downstream region at tRNA end position 
cactcagata
Secondary structure (Cloverleaf model)
>W2011971106	Ser	GCT
                   c      GCCA cactcagata
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     C - G
                     G - C          T A
                    T     T T C C C     A
      T G A        G      + | | | |     G
    G       G C C G       G A G G G     C
    G         | | |                 T T
    T       A G G C
      C G A        A     CAGGCGGGAAACCGCCTC
                    C - G
                    A - T
                    C - G
                    C - G
                    C - G
                  C       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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