The detailed information of tRNA gene sequence


Sequence ID>W2012209749
Genome IDVYTY01000018
Search identical group
Phylum/ClassGammaproteobacteria
SpeciesNitrincola alkalisediminis JCM 19317 [VYTY]
Start position on genome 11821
End posion on genome 11897
Amino Acid fMet
Anticodon CAT
Upstream region at tRNA start position 
aaagttttga
tRNA gene sequence 
TGCGGGGTGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCATAGGTTCAAA
TCCTGTCCCCGCTACCA
Downstream region at tRNA end position 
attttagcgt
Secondary structure (Cloverleaf model)
>W2012209749	fMet	CAT
                   a      ACCA attttagcgt
                     T   T
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T G T C C     A
      T G A        G      | + | | |     A
    C       C G A G       A T A G G     C
    T       | | | |                 T T
    G       G C T C
      G T A        G     AGGTC
                    T - A
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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