The detailed information of tRNA gene sequence


Sequence ID>SRA1000789
Genome IDSRR001047.65085
Search identical group
Phylum/ClassTilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
Species
Start position on genome 74
End posion on genome 2
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
aaaaatataa
tRNA gene sequence 
CATCTATTGGTCCAAAGGCTAGGATGCTTGGTTGTCTCCCAGGTGGTTAGGGTTCGATTC
CCTAATAGATGGCan
Downstream region at tRNA end position 
nnnnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1000789	Asp	GTC
                   a      GCan nnnnnnnnnn
                     C - G
                     A - T
                     T - A
                     C - G
                     T - A
                     A - T
                     T - A          T T
                    T     A T C C C     A
      A A A        G      | | | | |     G
    G       C C T G       T A G G G     C
    G       | | | +                 T T
    C       G G A T
      T A          G     TGGT
                    C - G
                    T + G
                    T - A
                    G - C
                    G - C
                  T       C
                  T       T
                    G T C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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