The detailed information of tRNA gene sequence


Sequence ID>SRA1000800
Genome IDSRR001047.96546
Search identical group
Phylum/ClassTilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
Species
Start position on genome 28
End posion on genome 100
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
tcttaataaa
tRNA gene sequence 
GGCGTGTTGTCAGATCGGTTATGTAGGGCACTGCAAATGCTCGTAGGTAGGTTCGACTCC
TACACATGCCTCCn
Downstream region at tRNA end position 
nnnnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1000800	Cys	GCA
                   a      TCCn nnnnnnnnnn
                     G - C
                     G - C
                     C - G
                     G + T
                     T - A
                     G - C
                     T - A          T C
                    T     C A T C C     A
        T A        G      | | | | |     G
      C     G A C T       G T A G G     C
      G       | |                   T T
      G     A T G T
        T T        A     GTAG
                    G - C
                    G + T
                    G - C
                    C - G
                    A - T
                  C       A
                  T       A
                    G C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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