The detailed information of tRNA gene sequence


Sequence ID>SRA1000857
Genome IDSRR001047.298462
Search identical group
Phylum/ClassTilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
Species
Start position on genome 99
End posion on genome 26
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
ngggccttct
tRNA gene sequence 
ATCGCTCAGGTGTTATGGCTGCATGACGGTCTCCAAAACCGTGGGTCAGGGTTCGATTCC
CTGGGGCGGTGCGA
Downstream region at tRNA end position 
gtgtcacaaa
Secondary structure (Cloverleaf model)
>SRA1000857	Trp	CCA
                   t      GCGA gtgtcacaaa
                     A - T
                     T + G
                     C - G
                     G - C
                     C - G
                     T + G
                     C - G          T T
                    A     G T C C C     A
        A T        G      | | | | |     G
      T     T G T G       C A G G G     C
      G     + | | +                 T T
      G     G C A T
        C T        G     GGGT
                    A - T
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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