The detailed information of tRNA gene sequence


Sequence ID>SRA1001648
Genome IDSRR001076.44383
Search identical group
Phylum/ClassTilapia Farm, viral fraction from prebead pond at Kent SeaTech (Salton Sea, CA) (SRP000164)
Species
Start position on genome 40
End posion on genome 112
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
attttcaaat
tRNA gene sequence 
GGTCTTGTAGCCAAGTGGTTAGGCGGAGTTCTGCAAAAACTTCATAACAGCGGTTCGAAT
CCGTTCAAGACCTnnn
Downstream region at tRNA end position 
nnnnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1001648	Cys	GCA
                   t      Tnnn nnnnnnnnnn
                     G - C
                     G - C
                     T - A
                     C - G
                     T - A
                     T - A
                     G - C          T A
                    T     T T G C C     A
        G A        A      | + | | |     G
      T     A C C G       A G C G G     C
      G       | | |                 T T
      G     A G G C
        T T        G     CATAAC
                    G + T
                    A - T
                    G - C
                    T - A
                    T - A
                  C       A
                  T       A
                    G C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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