The detailed information of tRNA gene sequence


Sequence ID>SRA1004140
Genome IDSRR002328.168169
Search identical group
Phylum/ClassThe Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
Species
Start position on genome 37
End posion on genome 128
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
gcgttttatt
tRNA gene sequence 
GGAAGATTGCCAGAGTGGACTATTGGCACGGTTTGCTAAACCGATGGTGGCAGCAATGCG
GCACGAGCGTTCGAATCGCTCATCTTCCGCCA
Downstream region at tRNA end position 
caatttatgg
Secondary structure (Cloverleaf model)
>SRA1004140	Ser	GCT
                   t      GCCA caatttatgg
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     A - T
                     T - A          T A
                    T     C T C G C     A
      T G A        G      | | | | |     G
    G       G A C C       G A G C G     C
    G       + | | |                 T T
    A       T T G G
      C T A        C     TGGTGGCAGCAATGCGGCAC
                    A   A
                    C - G
                    G - C
                    G - C
                    T - A
                  T       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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