The detailed information of tRNA gene sequence


Sequence ID>SRA1005236
Genome IDSRR006907.128427
Search identical group
Phylum/Classmetagenomic water samples (SRP000427)
Species
Start position on genome 185
End posion on genome 270
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
accactactt
tRNA gene sequence 
GGAAGGTAGCCGGATAAGGTTTGCCGGGCCTGTTTGCTAAACAGTGCAACGTTAAGTTGT
GAGGGTTCGAATCCCTTGCCTTCCGCtc
Downstream region at tRNA end position 
cgttggctnn
Secondary structure (Cloverleaf model)
>SRA1005236	Ser	GCT
                   t      GCtc cgttggctnn
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     G - C
                     T + G          T A
                    A     T T C C C     A
    A A T A        G      + | | | |     G
  G         G G C C       G A G G G     C
  G         | | | |                 T T
  T         C C G G
    T T G          G     GCAACGTTAAGTTGT
                    C   T
                    C - G
                    T - A
                    G - C
                    T - A
                  T       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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