The detailed information of tRNA gene sequence


Sequence ID>ENV09001562
Genome IDABSR01030108
Search identical group
Phylum/ClassFreshwater sediment metagenome lwMethylamine_C1
Species
Start position on genome 346
End posion on genome 444
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
gaatcgcccc
tRNA gene sequence 
GGAAGCGCACGGGGTCCGGTGGCCCTCCTGGTCTTCAAAACCAGCGTGCTCGCTCCGAGA
GGGGCGGCGGGTGGGTTCGACTCCCACACGCTTCCGCCA
Downstream region at tRNA end position 
ttcaccgccg
Secondary structure (Cloverleaf model)
>ENV09001562	SeC	TCA
                   c      GCCA ttcaccgccg
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     C - G
                     G - C
                     C   A          T C
                    A     C A C C C     A
      C C T        C      | | | | |     G
    G       G G G G       G T G G G     C
    G       | | | +                 T T
    T       C C C T
      G G          C     CGTGCTCGCTCCGAGAGGGGCGGCGG
                    C - G
                    T - A
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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