The detailed information of tRNA gene sequence


Sequence ID>FG090500009
Genome IDCP000500
Search identical group
Phylum/ClassAscomycota
SpeciesPichia stipitis CBS 6054
Chromosome chr6
Start position on genome 1459604
End posion on genome 1459514
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
actttaacgtggtttagtcacgtgttttacgtgtcacgtgatttaaaacgtgatcaagtaacaacagcttgaaaaagcttcttttgaagagccgaaattg
tRNA gene sequence 
GCTTCACTAGCTCAGTTGGCAGAGCGTCAGTCTCATAATCTGAAGGTCGACAGTTCGAAC
CTGCCGTGGAGCAatt
Downstream region at tRNA end position 
tcgttttcattttttttgttctctacattctttatatgcagggaaattgatgggtaaacaaaacgcgaatctgtttaattacagaaaggataagcagtta
Secondary structure (Cloverleaf model)
>FG090500009	Met	CAT
                   g      Aatt tcgttttcattttttttgttctctacattctttatatgcagggaaattgatgggtaaacaaaacgcgaatctgtttaattacagaaaggataagcagtta
                     G - C
                     C - G
                     T - A
                     T + G
                     C - G
                     A - T
                     C - G          C A
                    T     C C G T C     A
      T G A        A      |   | | |     G
    T       C T C G       G A C A G     C
    G       | | | |                 T T
    G       G A G C
      C A          G     AGGTC
                    T - A
                    C - G
                    A - T
                    G - C
                    T   T
                  C       A
                  T       A *
                    C A T
intron: position=38, length=18 (in A-loop)
GTTTGTATTAATTGTGTC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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