The detailed information of tRNA gene sequence


Sequence ID>FG090800016
Genome IDCR380959
Search identical group
Phylum/ClassAscomycota
SpeciesCandida glabrata CBS 138 CBS138
Chromosome chrM
Start position on genome 116503
End posion on genome 116605
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
aactcttgaaggttgacagtgttgccaatggcaaaatcagtatatgaatctctgctataaatgctactcctgacgcccacttaactaacaaaatccaagt
tRNA gene sequence 
GTCCCAGTGGCCGAGTGGTTAAGGCGATGCCCTGCTAAGGCATTGGGTTTTACCTGCGCA
GGTTCGAATCCTGTCTGTGACGctt
Downstream region at tRNA end position 
tctttttttgttctttttttaatttttgttcccctccatattaaattgactgtcatgtactgataggaatatggcttacaataagtggacaattttgtac
Secondary structure (Cloverleaf model)
>FG090800016	Ser	GCT
                   t      Gctt tctttttttgttctttttttaatttttgttcccctccatattaaattgactgtcatgtactgataggaatatggcttacaataagtggacaattttgtac
                     G - C
                     T - A
                     C - G
                     C   T
                     C - G
                     A - T
                     G - C          T A
                    T     T G T C C     A
      T G A        G      + | | | |     G
    G       G C C G       G C A G G     C
    G         | | |                 T T
    T       A G G C
      T A          G     TGGGTTTTACCTGC
                    A - T
                    T - A
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A *
                    G C T
intron: position=38, length=21 (in A-loop)
TTCTCTCTACGAACAGCATTT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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