The detailed information of tRNA gene sequence


Sequence ID>FG090800017
Genome IDAE017342
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr2
Start position on genome 79263
End posion on genome 79172
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
caagtcggttgcggtttcttgatgggtttgtataactcttcttcccaaggggatatgtacaatgtgataggaagtgcgacaaaagcagaaacaagtgtgc
tRNA gene sequence 
GTGGGAGTAGCTCAGTTTTGGTTAGAGCAACCGATTGCAAATCGGTAGGTCGTGGGTTCG
AATCCCACTTCCCACTttt
Downstream region at tRNA end position 
ttccttgtttttgtttttttagtagtcgatccagtttagaactttttggctatcgatttgttttcaagtatgcatgcatttttgtctagtctggcatttg
Secondary structure (Cloverleaf model)
>FG090800017	Cys	GCA
                   c      Tttt ttccttgtttttgtttttttagtagtcgatccagtttagaactttttggctatcgatttgttttcaagtatgcatgcatttttgtctagtctggcatttg
                     G - C
                     T - A
                     G - C
                     G - C
                     G - C
                     A - T
                     G + T          T A
                    T     C A C C C     A
    T T G A        A      | | | | |     G
  T         C T C G       G T G G G     C
  T         | | | |                 T T
  G         G A G C
    G T T A        A     AGGTC
                    A - T
                    C - G
                    C - G
                    G - C
                    A - T
                  T       A
                  T       A *
                    G C A
intron: position=38, length=16 (in A-loop)
TTTTATATTTGTAATC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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