The detailed information of tRNA gene sequence


Sequence ID>FG090800021
Genome IDAE017345
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr5
Start position on genome 293214
End posion on genome 293127
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
tatcgaaaacagaggacccggtgaagctttgcaagtggaggtggaggcgcacaggcacgtgctcatccctaaacaaggaccttttcaaaaaatctcgtct
tRNA gene sequence 
GGAGCTGTAGTTCAATTGGTAGAATAACGGATTCCAAATCCGTCGGTCGCAGGTTCGATT
CCTGTCAGCTTCAaac
Downstream region at tRNA end position 
tttactttttattcattcacatggttcgtttctcccgttgtttccttcctgtctttctctgtaagagccccgtcttgcaattgtcgctcaacctttccca
Secondary structure (Cloverleaf model)
>FG090800021	Trp	CCA
                   t      Aaac tttactttttattcattcacatggttcgtttctcccgttgtttccttcctgtctttctctgtaagagccccgtcttgcaattgtcgctcaacctttccca
                     G - C
                     G + T
                     A - T
                     G - C
                     C - G
                     T - A
                     G - C          T T
                    T     T G T C C     A
      T A A        A      + | | | |     G
    T       C T T G       G C A G G     C
    G       | | | +                 T T
    G       G A A T
      T A          A     CGGTC
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  T       A
                  T       A *
                    C C A
intron: position=38, length=15 (in A-loop)
CTACTTCTGGTTGAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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