The detailed information of tRNA gene sequence


Sequence ID>FG090800027
Genome IDAE017347
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr7
Start position on genome 1287455
End posion on genome 1287552
Amino Acid Pro
Anticodon AGG
Upstream region at tRNA start position 
tgctgacaggaactttagaattgtgttccttggacagacattttcacaaatagttttgtgcattccgattcaacaacaattgggcttcggtggcatagcc
tRNA gene sequence 
GTTTCGTTGGTGCAGTGGTAGCATGCCCTCTTAGGGTGGGGGTGGTCCTCGGTTCAATCC
CGGGACGAGACCcaa
Downstream region at tRNA end position 
tatcttttttgttttgtttttttcagtttttcatgtttcgacatagcgtatttctatctttcgacatagcatatttctaatagtgatgctgaatggcaca
Secondary structure (Cloverleaf model)
>FG090800027	Pro	AGG
                   c      Ccaa tatcttttttgttttgtttttttcagtttttcatgtttcgacatagcgtatttctatctttcgacatagcatatttctaatagtgatgctgaatggcaca
                     G - C
                     T - A
                     T + G
                     T - A
                     C - G
                     G - C
                     T - A          C T
                    T     G G G C C     A
        G A        G      | + | | |     A
      T     C G T G       C T C G G     C
      G     | | | +                 T T
      G     G C A T
        T A        G     TGGTC
                    C - G
                    C - G
                    C - G
                    T + G
                    C - G
                  T       T
                  T       G *
                    A G G
intron: position=38, length=26 (in A-loop)
TTGGATTACGTAAAGTTTTCCGGCTT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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