The detailed information of tRNA gene sequence


Sequence ID>FG090800031
Genome IDAE017349
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr9
Start position on genome 139526
End posion on genome 139615
Amino Acid Ile
Anticodon AAT
Upstream region at tRNA start position 
ctgggaaaagaaacaagaggtataagcaacaggagctgtatcagtaaaaaaaaaaaaacatatataactggcgcataactacgaatgccaacaaatgatc
tRNA gene sequence 
GGTCGATTATATCAGTTGGTTTAGATAGTGGAGCTAATAACTCCAAGGTCGGCGGTTCGA
TCCCGTCATCGATCAttt
Downstream region at tRNA end position 
ctttttacttctgtcaactatgagaacttgcaataaatagtaggaagtcagaaaagttaggagggaacggagacaggggtcaattgacggggaacggagc
Secondary structure (Cloverleaf model)
>FG090800031	Ile	AAT
                   c      Attt ctttttacttctgtcaactatgagaacttgcaataaatagtaggaagtcagaaaagttaggagggaacggagacaggggtcaattgacggggaacggagc
                     G - C
                     G + T
                     T - A
                     C - G
                     G - C
                     A - T
                     T - A          C T
                    T     C T G C C     A
    T T G A        A      | + | | |     G
  G         C T A T       G G C G G     C
  G         | | | |                 T T
  T         G A T A
    T T A          G     AGGTC
                    T - A
                    G - C
                    G - C
                    A - T
                    G - C
                  C       A
                  T       A *
                    A A T
intron: position=38, length=15 (in A-loop)
ATAAATAACGTTATT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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