The detailed information of tRNA gene sequence


Sequence ID>FG090800040
Genome IDAE017349
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr9
Start position on genome 59158
End posion on genome 59067
Amino Acid Ala
Anticodon AGC
Upstream region at tRNA start position 
gcataatgatagggaagcgttatgtatacggcaataccacttacttcaactattgatcattcgccatcatataaaaggcacgatcaaataaaacaacaat
tRNA gene sequence 
GGGGGTGTAGCTCATTTGGCAGAGCGCGTCATTAGCATTGACGAGGTACTGGGTTCAATT
CCCAGCTCCTCCAcag
Downstream region at tRNA end position 
ctttttactttttgccccttatctcatctttatctatcaatcacctgacctcttttatcttaacgggattccaggtcagtcctcatttgtatcaccatcc
Secondary structure (Cloverleaf model)
>FG090800040	Ala	AGC
                   t      Acag ctttttactttttgccccttatctcatctttatctatcaatcacctgacctcttttatcttaacgggattccaggtcagtcctcatttgtatcaccatcc
                     G - C
                     G - C
                     G + T
                     G - C
                     G - C
                     T   T
                     G - C          T T
                    T     G A C C C     A
      T T A        A      | | | | |     A
    T       C T C G       C T G G G     C
    G       | | | |                 T T
    G       G A G C
      C A          G     AGGTA
                    C - G
                    G - C
                    T - A
                    C - G
                    A - T
                  T       T
                  T       A *
                    A G C
intron: position=38, length=19 (in A-loop)
TCTTCTAAACAAAAGGTTC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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