The detailed information of tRNA gene sequence


Sequence ID>FG090800043
Genome IDAE017350
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr10
Start position on genome 909953
End posion on genome 910034
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
actgatccgcaatcgccgatggcgacaatgtggcgcggcaaataagcctatgaatggttatttgtttttatatgaatttggagtgcgactaatatcaaaa
tRNA gene sequence 
GTCCCTATAGTCTAGTGGTTATGACGTAACATTGTGGCTGTTGAGGCGCCTGTTCGATTC
AGGCTAGGGACAttt
Downstream region at tRNA end position 
ttttggtatttttgtccttcttggttaccttcctgatctttcttatgttttgacgctcttctccaatcggcattcttcactgacttcatttcatatagcg
Secondary structure (Cloverleaf model)
>FG090800043	His	GTG
                   a      Attt ttttggtatttttgtccttcttggttaccttcctgatctttcttatgttttgacgctcttctccaatcggcattcttcactgacttcatttcatatagcg
                     G - C
                     T - A
                     C - G
                     C - G
                     C - G
                     T - A
                     A - T          T T
                    T     C G G A C     A
      T G A        A      | | | | |     G
    G       T C T G       G C C T G     C
    G         | | |                 T T
    T       T G A C
      T A          G     AGGC
                    T + G
                    A - T
                    A - T
                    C - G
                    A - T
                  T       C
                  T       G *
                    G T G
intron: position=38, length=10 (in A-loop)
AGTGGATAAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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