The detailed information of tRNA gene sequence


Sequence ID>FG090800044
Genome IDAE017350
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr10
Start position on genome 938025
End posion on genome 937943
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
aggcacaaaaaagtacccacagtgcatattcttcgtttgatcagaattacgtagcaggaaaatgtatatataagcttttgctgcttaaggaacatcacaa
tRNA gene sequence 
AACAGCGTAATTCAGAGGAAGAATGCAAGGCTCATAACCTTGAAGTCGCTGGATCGAAAC
CAGCCGCTGTTAttt
Downstream region at tRNA end position 
tttttttagtcatcacgtcaaagctcatgggcgaatcccaatgcttacttttttacgaatacgctttgcatatattgctgctgtgtagtcatataataca
Secondary structure (Cloverleaf model)
>FG090800044	Met	CAT
                   a      Attt tttttttagtcatcacgtcaaagctcatgggcgaatcccaatgcttacttttttacgaatacgctttgcatatattgctgctgtgtagtcatataataca
                     A - T
                     A - T
                     C - G
                     A - T
                     G - C
                     C - G
                     G - C          A A
                    T     C G A C C     A
        G A        A      | | | | |     G
      A     C T T A       G C T G G     C
      G     | | | |                 A T
      G     G A A T
        A A        G     AAGTC
                    C - G
                    A - T
                    A - T
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
intron: position=38, length=11 (in A-loop)
CTAACTTGGGT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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