The detailed information of tRNA gene sequence


Sequence ID>FG090800049
Genome IDAE017351
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr11
Start position on genome 573294
End posion on genome 573396
Amino Acid Leu
Anticodon AAG
Upstream region at tRNA start position 
atatgaatgacaataatcacatataatggccgaaaaacgaccgaatttgcgtaaaagatcctagtagagttcatgccccccccgccgacatgtatgacac
tRNA gene sequence 
GGCGAGATGTGTGAGTGGTCTAAACAGCTGTCTTAAGGCGGCAGTCCGTAAGGGCGTGGG
TTCGAATCCCACTCTCGTCAatt
Downstream region at tRNA end position 
cttttgcttttttcttttgttggctcctcatcttttgttggctcctcacaccataattcccgccatcagaacgccgtatttcgccatactcaatatacgc
Secondary structure (Cloverleaf model)
>FG090800049	Leu	AAG
                   c      Aatt cttttgcttttttcttttgttggctcctcatcttttgttggctcctcacaccataattcccgccatcagaacgccgtatttcgccatactcaatatacgc
                     G - C
                     G + T
                     C - G
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C A C C C     A
      T G A        G      | | | | |     G
    G       G T G T       G T G G G     C
    G         | | |                 T T
    T       A A C A
      C T A        G     TCCGTAAGGGC
                    C - G
                    T - A
                    G - C
                    T + G
                    C - G
                  T       C
                  T       G *
                    A A G
intron: position=38, length=23 (in A-loop)
TAATCGTTGTATTACGTAAGCAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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