The detailed information of tRNA gene sequence


Sequence ID>FG090800060
Genome IDAE017353
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr13
Start position on genome 679351
End posion on genome 679469
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
ctccgtagtttagtgtggtttagagcgtcagactgtaattggtttccaaaatcacatctgaaagtcgtgcgttcgactcgcaccggggagattcaaattt
tRNA gene sequence 
GCCCCCGTGGCGCAATCGGTAGCGCGCACGACTCTTAATCGTGCGGTTGCGGGTTCGAGC
CCCGCCGGAGGCTttt
Downstream region at tRNA end position 
ttttaatctttttccttatcttctgaccatgtaatttttggtatcttgcgacgttctatgtctcgtctcatcgccctacagtgagcagaatgaatggctt
Secondary structure (Cloverleaf model)
>FG090800060	Lys	CTT
                   t      Tttt ttttaatctttttccttatcttctgaccatgtaatttttggtatcttgcgacgttctatgtctcgtctcatcgccctacagtgagcagaatgaatggctt
                     G - C
                     C - G
                     C - G
                     C   A
                     C - G
                     C - G
                     G - C          C G
                    T     C G C C C     A
      T A A        G      | | | | |     G
    C       C G C G       G C G G G     C
    G       | | | |                 T T
    G       G C G C
      T A          G     CGGTT
                    C - G
                    A - T
                    C - G
                    G - C
                    A - T
                  C       A
                  T       A *
                    C T T
intron: position=38, length=46 (in A-loop)
ACGAGTCTATTTGAGCCGATTATGGGCCATCAATCATTTCTTCGTC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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