The detailed information of tRNA gene sequence


Sequence ID>FG090800069
Genome IDAL590444
Search identical group
Phylum/ClassMicrosporidia
SpeciesEncephalitozoon_cuniculi_GB-M1
Chromosome chr4
Start position on genome 57467
End posion on genome 57581
Amino Acid Ile
Anticodon TAT
Upstream region at tRNA start position 
actcgatccacttcctcgtctccaccatggagcgcttatttgttgccatctggtcgggggttgagtgcgataattggacacttctgtggaaggtttgcaa
tRNA gene sequence 
GCCCCCGTAGCTCAGTCGGTCAGAGCGTGGTACTTATAATGCCAAGGTCGCGGGTTCGAG
CCCCGCTGGAGGCAttt
Downstream region at tRNA end position 
ttgctgcagacatcgcaaccttttaattgactttgcacccccctgccgtcaaaagtaaatgttcaccttcctaaactccagcagtagagcaagaaaatcg
Secondary structure (Cloverleaf model)
>FG090800069	Ile	TAT
                   a      Attt ttgctgcagacatcgcaaccttttaattgactttgcacccccctgccgtcaaaagtaaatgttcaccttcctaaactccagcagtagagcaagaaaatcg
                     G - C
                     C - G
                     C - G
                     C   A
                     C - G
                     C - G
                     G + T          C G
                    T     C G C C C     A
      T G A        A      | | | | |     G
    C       C T C G       G C G G G     C
    G       | | | |                 T T
    G       G A G C
      T C A        G     AGGTC
                    T - A
                    G - C
                    G - C
                    T + G
                    A - T
                  C       A
                  T       A *
                    T A T
intron: position=38, length=41 (in A-loop)
TGCTGGAAAGCTGTGCAAAACTTGGCTTACACTGCTAAGAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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