The detailed information of tRNA gene sequence


Sequence ID>FG090800073
Genome IDCM000437
Search identical group
Phylum/ClassAscomycota
SpeciesPichia stipitis CBS 6054
Chromosome ch1
Start position on genome 2138354
End posion on genome 2138446
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
agaaggcagcgtaaaaaccgaaacttaattcggagaaaatcctgcatatagctgaattgaatgagaaatataacttttctcgggtttccgaaaaaaagga
tRNA gene sequence 
GTTACAGTGGCCGAGTGGTTAAGGCGACACCCTGCTAAGGTGTTGGGATTTTCCTTCGCA
GGTTCGAATCCTGTCTGTGACGtga
Downstream region at tRNA end position 
agtttatttttttgaatttgatatagcgataatacaacattggaggcaagctcagaagaagatatgcttagtatctataatgaaacaccgacctggtgaa
Secondary structure (Cloverleaf model)
>FG090800073	Ser	GCT
                   a      Gtga agtttatttttttgaatttgatatagcgataatacaacattggaggcaagctcagaagaagatatgcttagtatctataatgaaacaccgacctggtgaa
                     G - C
                     T - A
                     T + G
                     A - T
                     C - G
                     A - T
                     G - C          T A
                    T     T G T C C     A
      T G A        G      + | | | |     G
    G       G C C G       G C A G G     C
    G         | | |                 T T
    T       A G G C
      T A          G     TGGGATTTTCCTTC
                    A - T
                    C - G
                    A - T
                    C - G
                    C - G
                  C       A
                  T       A *
                    G C T
intron: position=38, length=11 (in A-loop)
TTAAGCGGTTC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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