The detailed information of tRNA gene sequence


Sequence ID>FG090800075
Genome IDCM000437
Search identical group
Phylum/ClassAscomycota
SpeciesPichia stipitis CBS 6054
Chromosome ch1
Start position on genome 3180652
End posion on genome 3180744
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
aagataaaaacccgaattatattaagaaaactgaaattcctgcatataagcaatatattcttaggtgtttgtattttagcggtagtcagtcaacaatctg
tRNA gene sequence 
GGTTTAGTGGTGTAGCGGCTATCACGTTTCGTTTACACCGAAAAGGCCCCGAGTTCGATC
CTCGGCTAGATCAgat
Downstream region at tRNA end position 
tcttttttgttcccatttgggataacctgtgcgaccgcaaatacctttttgggatattcctgcacagtgcctgaaaatacattttttatttacatctttt
Secondary structure (Cloverleaf model)
>FG090800075	Val	TAC
                   g      Agat tcttttttgttcccatttgggataacctgtgcgaccgcaaatacctttttgggatattcctgcacagtgcctgaaaatacattttttatttacatctttt
                     G - C
                     G + T
                     T - A
                     T + G
                     T - A
                     A - T
                     G - C          C T
                    T     G G C T C     A
      C G A        G      | | | | |     G
    G       T G T G       C C G A G     C
    G         | | |                 T T
    C       T C A C
      T A          G     AGGCC
                    T - A
                    T - A
                    T - A
                    C - G
                    G - C
                  T       C
                  T       A *
                    T A C
intron: position=38, length=20 (in A-loop)
GGTGTTATACACAGTAAGTT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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