The detailed information of tRNA gene sequence


Sequence ID>FG090800078
Genome IDCM000437
Search identical group
Phylum/ClassAscomycota
SpeciesPichia stipitis CBS 6054
Chromosome ch1
Start position on genome 2095357
End posion on genome 2095275
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
tttaccagcctggttagctcaatcggtagagcgtttgactcttaagttagacatcaaaaggttgcgggttcgacccccgcatcgggctgtttcctctgtt
tRNA gene sequence 
GCCTGGTTAGCTCAATCGGTAGAGCGTTTGACTCTTAATCAAAAGGTTGCGGGTTCGACC
CCCGCATCGGGCTtcc
Downstream region at tRNA end position 
tttttgctcctcacttaggctggttactggtgggctctctctttattagttttggtgttttttttgtaatgataaagaattttggtattcccgaagatat
Secondary structure (Cloverleaf model)
>FG090800078	Lys	CTT
                   t      Ttcc tttttgctcctcacttaggctggttactggtgggctctctctttattagttttggtgttttttttgtaatgataaagaattttggtattcccgaagatat
                     G - C
                     C - G
                     C - G
                     T + G
                     G - C
                     G + T
                     T - A          C C
                    T     C G C C C     A
      T A A        A      | | | | |     G
    C       C T C G       G C G G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     AGGTT
                    T - A
                    T - A
                    T - A
                    G - C
                    A - T
                  C       A
                  T       A *
                    C T T
intron: position=38, length=10 (in A-loop)
TAAACTGGAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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