The detailed information of tRNA gene sequence


Sequence ID>FG090800146
Genome IDCR382130
Search identical group
Phylum/ClassAscomycota
SpeciesYarrowia lipolytica CLIB122
Chromosome chrD
Start position on genome 1802994
End posion on genome 1803089
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
caatatttgagaaaagtcatgatttttgttgtttttttatcgcggaagtttcgattttttacatcatgtataagcccaaaaaactcaaaaaatatcttcc
tRNA gene sequence 
GTCCCGGTGGCCGAGTGGTTAAGGCGTTGCCCTGCTAAGGCAGTGGGTTTTGCCCGCGCA
GGTTCGAATCCTGTCCGTGACGatt
Downstream region at tRNA end position 
ttttgctggatttcgggattttaagcttccctacttgagggttacccggccgaacacttccaacaatttgcctttaccaatgaaagttgacaatattaca
Secondary structure (Cloverleaf model)
>FG090800146	Ser	GCT
                   c      Gatt ttttgctggatttcgggattttaagcttccctacttgagggttacccggccgaacacttccaacaatttgcctttaccaatgaaagttgacaatattaca
                     G - C
                     T - A
                     C - G
                     C   T
                     C - G
                     G - C
                     G - C          T A
                    T     T G T C C     A
      T G A        G      + | | | |     G
    G       G C C G       G C A G G     C
    G         | | |                 T T
    T       A G G C
      T A          G     TGGGTTTTGCCCGC
                    T + G
                    T - A
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A *
                    G C T
intron: position=38, length=14 (in A-loop)
ATTTGTTAGCTGTC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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