The detailed information of tRNA gene sequence


Sequence ID>FG090800167
Genome IDCR382131
Search identical group
Phylum/ClassAscomycota
SpeciesYarrowia lipolytica CLIB122
Chromosome chrE
Start position on genome 1432846
End posion on genome 1432751
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
cccatcgtcctcatcagttttagtggcctgtaaaaaaaaacttagtcacgtgaccctgtctatcggtgatataatgaactttttaaaatttggaaaaact
tRNA gene sequence 
GGCAATTTGTCCGAGTGGTTTAAGGAGTTTGACTTGAAATCAAATGCGGTTTCCGCGCGT
AGGTTCGAGTCCTGCAATTGTCGcca
Downstream region at tRNA end position 
tttcttttttttgcattttttgctcaaaaatgctaccttttggccccaaaatcttgctataaataaatcaactcacgtatatgctatctgtctatcattt
Secondary structure (Cloverleaf model)
>FG090800167	Ser	TGA
                   t      Gcca tttcttttttttgcattttttgctcaaaaatgctaccttttggccccaaaatcttgctataaataaatcaactcacgtatatgctatctgtctatcattt
                     G - C
                     G + T
                     C - G
                     A - T
                     A - T
                     T - A
                     T - A          T G
                    T     C G T C C     A
      T G A        G      | + | | |     G
    G       G C C T       G T A G G     C
    G         | | |                 T T
    T       A G G A
      T T A        G     TGCGGTTTCCGCGC
                    T - A
                    T - A
                    T - A
                    G - C
                    A - T
                  C       A
                  T       A *
                    T G A
intron: position=38, length=13 (in A-loop)
TTTCTATTCAGCT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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