The detailed information of tRNA gene sequence


Sequence ID>FG092810001
Genome IDCU329670
Search identical group
Phylum/ClassAscomycota
SpeciesSchizosaccharomyces_pombe_972h-
Chromosome chr1
Start position on genome 1096369
End posion on genome 1096466
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
tgtgctaccattcacttaacttcctgattataaaattggttcgtttatactaattacttaagtacctttaactaaacaaaatgcctatatatatattaatttacaatgagtgtcagataa
tRNA gene sequence 
GTCACTATGTCCGAGTGGTTAAGGAGTTAGACTCGAAATCTAATGGGCTCTGCCCGCGCA
GGTTCAAATCCTGCTGGTGACGgta
Downstream region at tRNA end position 
gtatttgtgcgcggtaggagagtggaactccgacgggctcataacccgtaggtcccaggatcgaaacctggccgcgcaactatttttttaatttatgctgcataattgatgaaaagcaga
Secondary structure (Cloverleaf model)
>FG092810001	Ser	CGA
                   a      Ggta gtatttgtgcgcggtaggagagtggaactccgacgggctcataacccgtaggtcccaggatcgaaacctggccgcgcaactatttttttaatttatgctgcataattgatgaaaagcaga
                     G - C
                     T - A
                     C - G
                     A - T
                     C - G
                     T + G
                     A - T          T A
                    T     C G T C C     A
      T G A        G      | | | | |     A
    G       G C C T       G C A G G     C
    G         | | |                 T T
    T       A G G A
      T A          G     TGGGCTCTGCCCGC
                    T - A
                    T - A
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A *
                    C G A
intron: position=38, length=16 (in A-loop)
TTCCTACATTCGTGGC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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